PACBIO_SMRT sequencing of Escherichia fergusonii isolate RH15|T1-C23 ... - SRA

SRX8802138: PACBIO_SMRT sequencing of Escherichia fergusonii isolate RH15|T1-C23 cultured from Sheep faeces sample
1 PACBIO_SMRT (PacBio RS II) run: 141,586 spots, 1.2G bases, 779.2Mb downloads

Design: As per method in De Maio and Shaw et al. (2019, PMID 31483244): ONT sequencing libraries were prepared by multiplexing multiple DNA extracts per flowcell. Runs used four, six, or eight isolates per flowcell. See project publications for further details.

Submitted by: University of Oxford

Study: The environmental REsistome: confluence of Human and Animal Biota in antibiotic resistance spread (REHAB)

PRJNA605147 • SRP266402 • All experiments • All runs

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These isolates represent a dataset assembled by the REHAB team: A collaborative effort between the Animal and Plant Health Agency, the UK Centre for Ecology & Hydrology, Thames Water, Public Health England, and the University of Oxford. The focus of this study is on understanding bacterial diversity in four important clinical genera (Escherichia, Klebsiella, Enterobacter and Citrobacter), and strain, MGE and resistance gene flow amongst environmental and farm animal reservoirs, and in rivers around sewage treatment plants, in Oxfordshire, UK, in 2017.

Sample: Escherichia isolate RHB10-C23 cultured from Sheep faeces sample

SAMN15148066 • SRS6792417 • All experiments • All runs

Organism: Escherichia fergusonii

Library:

Name: Oxford Nanopore WGS of RHB10-C23

Instrument: PacBio RS II

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 141,586 spots, 1.2G bases, 779.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR12299075	141,586	1.2G	779.2Mb	2020-07-23

ID:: 11438408

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